Posts Categorized: toolshed

Jan 13, 2015 Galaxy Distribution Update (fixes several important security updates!)

Here are the latest updates to the Galaxy distribution which also fixes a number of recently discovered security holes. Thus, it is highly important to update your distribution now. Highlights: SECURITY FIXES “Several critical security vulnerabilities were recently discovered by Bartlomiej Balcerek and colleagues at the Wroclaw Centre for Networking and Supercomputing. Details regarding these… Read more »

Galaxy Workflow Developer

The John Innes Centre is a world-leading research institute specialising in plant and microbial science and, as such, is firmly in the era of “big data”. Much of our science employs next generation sequencing (NGS) technologies and the aim is to train our staff to become more self-sufficient in carrying out the most common types… Read more »

Galaxy Distribution update Jun 2014

Here are the latest updates to the Galaxy distribution. Highlights: Dataset Collections introduced Changes to database build (dbkey) organization Enhancements to Tool configuration and Workflow options Trackster, User Interface, and Admin panel upgrades Significant updates to Admin and Job functionality Tool Shed repository and API additions Data updates plus new Security features and Bug fixes… Read more »

Galaxy Distribution update Apr 2014

Here are the latest updates to the Galaxy distribution. Highlights: Visualization framework and Trackster display enhancements Tool Shed upgrades for repos, installs, tests, and docs Over 100 genomes with new content on our rsync server UI unification of design plus expanded dataset action access API functionality additions including new job control/admin abilities More features for… Read more »

Galaxy Distribution update Feb 2014

Here are the latest updates to the Galaxy distribution. Highlights: Visualization upgrades, including Trackster CSS styling Multiple Tools migrated to the Tool Shed for a leaner distribution Redesign of UI rendering: new icons, new font, history pane updates API functionality upgrades featuring a new master admin API key Tool Shed updates a focus on repository… Read more »

Galaxy Distribution update Nov 2013

Here are the latest updates to the Galaxy distribution. Highlights: A security vulnerability with filter tools trapped and fixed: Upgrade or Patch NOW Galaxy Tool Migration: 48 tools migrated to Tool Shed for a leaner distribution. Improved tools for administrators (email verification, reports). The framework for Tools, Visualizations, and the Core have been upgraded for… Read more »

Galaxy Distribution update Aug 2013

Here are the latest updates to the Galaxy distribution. Highlights: Upgrades to Data Manager including improved installation actions Visualization Framework tunings, plus updates to Phyloviz, Scatterplot, and Trackster Workflows include new reproducibility controls and editing features Multiple Tool Shed enhancements, features, and tunings Plus additional updates to the UI, Admin and Core, and API, an… Read more »

Galaxy distribution update Jun 2013

Here are the latest updates to the Galaxy distribution. Highlights: Visualization tool updates to Scatterplot and Trackster. Job distribution, error tracking/management, and reporting function improvements to Admin & Core. Multiple Tool updates, History and Dataset upgrades, and other related UI enhancements. New features and fixes added to the Tool Shed and related components. Python 2.5… Read more »